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Table 2 Performance of methylation prediction using whole-genome bisulfite sequencing data

From: Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements

Training set Test set Accuracy (%) Precision (%) Recall (%) TN FN TP FP R RMSE
WGBS 450K sites WGBS non 450K sites 92.4 86.5 44.5 78264 6095 4890 764 0.64 0.24
WGBS 450K sites WGBS 450K sites 90 91.8 82.3 51260 6374 29726 2653 0.86 0.23
450K data WGBS non 450K sites 92.2 88.5 41.4 78437 6442 4543 591 0.62 0.23
450K data WGBS 450K sites 89.3 93.0 79.3 51762 7465 28635 2151 0.84 0.24
  1. FN, false negatives; FP, false positives; RMSE, root-mean-square error; TN, true negatives; TP, true positives; WGBS, whole-genome bisulfite sequencing.