Figure 1
From: Quantification of cell identity from single-cell gene expression profiles
Characterization of single-cell profiles from the Arabidopsis root. (A) Confocal image showing the markers used and cell types collected in this study. WOX5:GFP marks the QC, and WOL:CRE-GR 35S:lox-CFP is a lineage marker for the stele. (B) Noise (coefficient of variation) in the technical repeats (black) and in four individual QC cells from the same batch (orange). (C) Number of genes detected as a function of sequencing depth for different cell types. Red, QC; blue, stele; green, atrichoblasts. (D) Hierarchical clustering of a cross-correlation matrix between the single cell profiles. Batches are color coded (blue [10]; orange, this study) to show batch effects.