Dataset | Comparisons | Direction | Genes or pathways | FDR | Rank | Experimental support |
---|---|---|---|---|---|---|
Leukemia | HL-60, KBM7, treatment versus control | Positive | MAP4K3 | 0.14 | 9 | [22] |
EPM2A | 0.14 | 10 | [23] | |||
Negative | KEGG: ribosome | 4.71E-4 | 1/181 | [3] | ||
HL-60 versus KBM7 | Negative | IGF1R | 1.98E-3 | 1 | [30] | |
KBM7 versus HL-60 | Negative | BCR | 1.60E-3 | 7 | [31] | |
ABL1 | 1.98E-3 | 18 | ||||
KEGG: chronic myeloid leukemia | 9.00E-4 | 6/181 | ||||
Melanoma | PLX treatment versus control (14Â days) | Positive | CDH13 | 0.017 | 9 | |
PPT1 | 0.085 | 14 | [19] | |||
NF1, NF2, MED12, CUL3, TADA1, TADA2B | <0.031 | 11 (max) | [4] | |||
Negative | RREB1 | 0.050 | 1 | |||
PLX treatment versus control (7Â days) | Positive | NF1, NF2, MED12, CUL3, TADA1, TADA2B | <0.030 | 26 (max) | [4] | |
Negative | EGFR | 0.025 | 6 | |||
REACTOME: SHC1 events in EGFR signaling | 0.069 | 1/676 | ||||
REACTOME: signaling by constitutive active EGFR | 0.069 | 2/676 | ||||
DMSO treatment 14Â days versus 7Â days | Negative | KEGG: oxidative phosphorylation | 3.30E-3 | 2/181 | [18] | |
ESC | ESC versus plasmid | Positive | TRP53 | 0.010 | 1 | [24] |
Negative | KEGG: ribosome | 2.83E-4 | 1/181 | [6] | ||
NANOG, POU5F1, RAD51, BRCA1 | <0.016 | 217 (max) |