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Table 2 Comparison of locally collinear alignment block (LCB) count for simulated E. coli datasets, on assembled and finished genomes

From: The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

Method

Low

Medium

High

Mauve

325

363

519

Mauve (c)

150

174

333

Mugsy

10,977

11,194

16,632

Mugsy (c)

237

247

351

Parsnp

205

271

344

Parsnp (c)

139

190

506

  1. Method: Tool used.
  2. (c) indicates aligner ran on closed genomes rather than draft assemblies.
  3. Low: >99.99% similarity, Medium: >99.9% similarity, High: >99% similarity.
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Genome Biology

ISSN: 1474-760X

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