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Table 2 Comparison of locally collinear alignment block (LCB) count for simulated E. coli datasets, on assembled and finished genomes

From: The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

Method Low Medium High
Mauve 325 363 519
Mauve (c) 150 174 333
Mugsy 10,977 11,194 16,632
Mugsy (c) 237 247 351
Parsnp 205 271 344
Parsnp (c) 139 190 506
  1. Method: Tool used.
  2. (c) indicates aligner ran on closed genomes rather than draft assemblies.
  3. Low: >99.99% similarity, Medium: >99.9% similarity, High: >99% similarity.