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Table 1 Accuracy measures for datasets simulated with Mason with various sequencing depths and error rates

From: Lighter: fast and memory-efficient sequencing error correction without counting

Coverage   35× 70× 140×
Error rate   1 % 3 % 1 % 3 % 1 % 3 %
α for Lighter   0.2 0.2 0.1 0.1 0.05 0.05
  Quake 89.68 48.77 89.64 48.82 89.59 48.78
  SOAPec 57.71 38.00 57.57 37.71 57.09 36.76
Recall Musket 93.75 92.62 93.73 92.64 93.73 92.63
  Bless 99.81 99.33 99.82 99.58 99.82 99.58
  Lighter 99.87 98.53 99.84 98.72 99.86 98.78
  Quake 99.99 99.99 99.99 99.99 99.99 99.99
  SOAPec 99.99 100.00 99.99 99.99 99.99 99.99
Precision Musket 99.99 99.93 99.99 99.93 99.99 99.93
  Bless 99.73 98.86 99.73 99.35 99.72 99.36
  Lighter 99.98 99.96 99.98 99.96 99.98 99.96
  Quake 94.55 65.56 94.54 65.61 94.51 65.57
  SOAPec 73.18 55.07 73.07 54.77 72.68 53.75
F score Musket 96.77 96.14 96.76 96.15 96.76 96.15
  Bless 99.77 99.09 99.77 99.47 99.77 99.47
  Lighter 99.93 99.24 99.91 99.33 99.92 99.36
  Quake 89.67 48.76 89.64 48.82 89.59 48.78
  SOAPec 57.70 38.00 57.57 37.71 57.09 36.75
Gain Musket 93.74 92.56 93.72 92.58 93.72 92.57
  Bless 99.54 98.19 99.54 98.93 99.54 98.94
  Lighter 99.85 98.49 99.81 98.68 99.84 98.73
  Quake 17 17 17 17 17 17
  SOAPec 17 17 17 17 17 17
k Musket 23 19 23 19 23 19
  Bless 31 23 31 23 31 23
  Lighter 23 19 23 19 23 19
  1. Rows labeled k show the k-mer sizes selected for each tool and dataset.