Table 2 Selected UTR-level features by correlation-based feature selection
From: mirMark: a site-level and UTR-level classifier for miRNA target prediction
Feature | Description |
|---|---|
Miranda_score.max | Maximum alignment score between miRNA and target sites |
Seed_match_6mer2.mean | Proportion of target sites with P02-P07 WC match |
miR_match_P01.min | Match status of miRNA position 1 |
Seed_match_7mer2.max | Proportion of target sites with P02-P08 WC match |
Seed_match_7mer1.mean | Proportion of target sites with P01-P07 WC match |
Seed_MFE.min | Minimum MFE of seed region of miRNA:site duplexes |
X3p_MFE.mean | Mean MFE of 3' region of miRNA:site duplexes |
Target_UC_comp.mean | UC dimer composition of the CTS |
miR_match_P09.mean | Match status of miRNA position 9 |
miR_match_P02.min | Match status of miRNA position 2 |
Seed_GU.mean | Mean number of GU matches in target site seed regions |
miR_match_P07.mean | Match status of miRNA position 7 |
Start_position.min | Minimum distance of target sites to the 5′ end of the 3' UTR |
miR_match_P19.min | Match status of miRNA position 19 |
miR_match_P15.min | Match status of miRNA position 15 |