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Table 4 rdd -downregulated stress response genes are enriched for promoter TE sequences

From: DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis

  Total genes surveyed (n) Genes with promoter TE (n) Genes with 3' TE (n) Genes with gene body TE (n)
All Stress response genes from MapMan analysis 99 45 (45.4%) 15 (15.2%) 3 (3.0%)
≥4-fold downregulated stress response genes 24 16 (66.7%) 1 (4.2%) 1 (4.2%)
2-4-fold downregulated stress response genes 75 29 (38.7%) 14 (18.7%) 2 (2.7%)
Random gene set 1 77 23 (29.9%) 10 (13.0%) 1 (1.3%)
Random gene set 2 130 42 (32.3%) 11 (8.5%) 2 (1.5%)