Figure 6

A physical map of the mnd locus. (a) Fingerprinted (FP) contigs carrying flanking and co-segregating markers (triangles) as well as the MND gene (diamond). The physical map is not contiguous between contigs 1020 and 45097. A scale bar for all panels is given on top. (b) Sequenced BACs. BACs were positioned according to their FPC coordinates [23]. (c) Gene models and orthologous Brachypodium genes. Tracks (from top to bottom) mark the positions of (1) gene models present in both de novo predictions with Augustus and the IBSC gene models (green - high-confidence (HC) IBSC genes, blue - low-confidence (LC) IBSC genes); (2) gene models only predicted by Augustus; (3) gene models predicted by IBSC (green - HC genes; blue - LC genes); (4) orthologous Brachypodium genes, only the last four digits of the gene identifier Bradi4g3xxxx are given. (d) SNPs discovered by exome sequencing and anchored to BAC sequences are marked by vertical lines.