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Table 3 Summary of repeat elements annotated in B. rapa and B. oleracea

From: Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

 

B. rapa

  

B. oleracea

  

Repeat elementa

Number of copies

Number of base pairs

Percentage genome (not N)

Number of copies

Number of base pairs

Percentage genome (not N)

  

283,841,084

273,102,035

 

488,622,507

445,620,295

RLC

30,349

11,292,047

4.13%

77,899

42,075,014

9.44%

RLG

19,229

9,327,740

3.42%

52,619

36,956,399

8.29%

RLX

11,358

3,768,473

1.38%

22,357

10,165,627

2.28%

RSX

4,248

549,493

0.20%

8,442

1,141,202

0.26%

RIL

2,658

1,200,998

0.44%

4,845

2,500,079

0.56%

RIX

4,432

2,059,525

0.75%

6,453

4,002,179

0.90%

Subtotal

  

10.33%

  

21.73%

DTA

14,722

2,915,918

1.07%

22,838

5,053,940

1.13%

DTC

17,742

5,289,213

1.94%

44,958

16,124,758

3.62%

DTH

2,057

581,852

0.21%

4,028

1,193,462

0.27%

DTM

13,307

3,022,686

1.11%

19,208

5,098,147

1.14%

DTT

16,867

2,720,339

1.00%

33,537

6,425,309

1.44%

DTX

29,919

7,453,903

2.73%

46,687

12,566,497

2.82%

DHH

46,182

10,206,949

3.74%

67,720

18,514,526

4.15%

Subtotal

  

11.79%

  

14.58%

Unclassified

 

2,183,677

0.80%

 

3,945,235

0.89%

Total

213,070

62,572,813

22.91%

411,591

165,762,374

37.20%

  1. aRepeat elements are named according to Wicker et al. [44].
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Genome Biology

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