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Table 1 Top 16 genes differentially expressed between males and females in the Nigerian data

From: voom: precision weights unlock linear model analysis tools for RNA-seq read counts

Ensembl ID Symbol Chr logFC AveExpr t Pvalue FDR B
ENSG00000229807 XIST X -9.815 3.8084 -36.4 7.03e-48 1.19e-43 74.8
ENSG00000099749 CYorf15A Y 4.251 0.3146 28.3 1.25e-40 1.05e-36 68.2
ENSG00000157828 RPS4Y2 Y 3.281 3.3081 26.5 9.38e-39 5.27e-35 72.6
ENSG00000233864 TTTY15 Y 4.897 -0.5538 25.9 4.31e-38 1.82e-34 64.0
ENSG00000131002 CYorf15B Y 5.440 -0.1710 23.2 4.81e-35 1.62e-31 60.0
ENSG00000198692 EIF1AY Y 2.398 2.6806 20.5 1.09e-31 3.07e-28 58.6
ENSG00000165246 NLGN4Y Y 5.330 -0.4916 19.7 1.26e-30 3.03e-27 52.4
ENSG00000213318 RP11-331F4.1 16 4.293 2.2654 19.3 4.44e-30 9.34e-27 54.1
ENSG00000129824 RPS4Y1 Y 2.781 4.7118 17.6 9.28e-28 1.74e-24 51.5
ENSG00000183878 UTY Y 1.878 2.7430 16.6 2.88e-26 4.85e-23 47.7
ENSG00000012817 KDM5D Y 1.470 4.7046 14.9 1.45e-23 2.22e-20 42.6
ENSG00000146938 NLGN4X X 4.472 -0.7801 14.8 2.09e-23 2.94e-20 38.9
ENSG00000243209 AC010889.1 Y 2.528 -0.0179 14.5 5.48e-23 7.11e-20 37.9
ENSG00000067048 DDX3Y Y 1.671 5.3077 13.4 3.05e-21 3.67e-18 37.5
ENSG00000006757 PNPLA4 X -0.988 2.5341 -10.4 4.78e-16 5.38e-13 25.7
ENSG00000232928 RP13-204A15.4 X 1.434 3.2506 10.3 1.02e-15 1.08e-12 25.2
  1. The table shows output from the limma topTable function. As well as gene ID and symbol, columns give chromosome location (Chr), log2-fold-change (logFC), average log2 expression (AveExpr), moderated t, P value, false discovery rate and B-statistic for each gene. The B-statistic is the posterior log-odds of differential expression.