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Table 4 PIPE-CLIP results summary for the Nova iCLIP data

From: PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis

FDR <0.1 <0.05 <0.01 <0.001 <0.0001
Number of enriched clusters 7,837 4,283 1,956 1,059 775
Number of reliable truncations 4,724 4,584 3,974 953 851
Number of cross-linking regions 3,861 2,153 848 376 288
  1. The total numbers of enriched clusters, reliable truncations and cross-linking regions identified by PIPE-CLIP using different FDR thresholds are shown. The FDR threshold is the same for both the procedure of looking for enriched clusters and reliable mutations.