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Table 4 PIPE-CLIP results summary for the Nova iCLIP data

From: PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis

FDR

<0.1

<0.05

<0.01

<0.001

<0.0001

Number of enriched clusters

7,837

4,283

1,956

1,059

775

Number of reliable truncations

4,724

4,584

3,974

953

851

Number of cross-linking regions

3,861

2,153

848

376

288

  1. The total numbers of enriched clusters, reliable truncations and cross-linking regions identified by PIPE-CLIP using different FDR thresholds are shown. The FDR threshold is the same for both the procedure of looking for enriched clusters and reliable mutations.
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Genome Biology

ISSN: 1474-760X

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