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Table 3 Cross-linking regions identified by PIPE-CLIP for the Ago HITS-CLIP data

From: PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis

  FDR <0.1 FDR <0.05 FDR <0.01 FDR <0.001 FDR <0.0001
Enriched clusters 58,614 41,390 20,781 8,744 6,288
Reliable mutations 14,957 14,271 5,872 5,546 5,044
Cross-linking regions 3,778 2,833 1,232 534 328
  1. The total numbers of cross-linking regions identified by PIPE-CLIP using different FDR thresholds are shown. The FDR thresholds are the same for both the procedure of looking for enriched clusters and reliable mutations.