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Table 3 Comparison of predicted ORFs (excluding pseudogenes) with T. aestivum genomic DNA contigs

From: Separating homeologs by phasing in the tetraploid wheat transcriptome

Transcriptome T. urartu T. turgidum
Putative correct homoeolog (Id ≥ 99% identity)
≥95% coverage in one CS contig
14,678 32,554
≥95% coverage in more than one CS contig 489 911
≥65% coverage in one or more CS contigs 2,094 3,136
Putative homoeolog from different genome (94%≤ Id < 99%)
≥95% coverage in one CS contig
12,239 17,437
≥95% coverage in more than one CS contig 1,146 1,549
≥65% coverage in one or more CS contigs 2,416 3,262
Not aligned   
Id <94% or coverage <65%) 4,549 7,370
Number of query sequences with no significant BLAST hits (e-10) 195 414
Total number of query sequences 37,806 66,633