Figure 5From: TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusionsThe number of spliced-read alignments from TopHat2, GSNAP, STAR, and MapSplice without using gene annotation. The number of read alignments whose splice sites were found in the gene annotations are shown in brown, and the number of all spliced-read alignments including novel splice sites are shown in green.Back to article page