Table 4 Chimeric RNA detection in breast cancer libraries
From: CRAC: an integrated approach to the analysis of RNA-seq reads
Edgren libraries | CRAC | TopHat-fusion | ||||||
|---|---|---|---|---|---|---|---|---|
Raw | After GSNAP | Raw | After GSNAP | |||||
Number of chRNAs | Number of reads | Number of chRNAs | Number of reads | Number of chRNAs | Number of reads | Number of chRNAs | Number of reads | |
BT-474 | 692 | 9,661 | 153 | 460 | 109,711 | 349,801 | 81,327 | 189,523 |
KPL-4 | 407 | 5,157 | 60 | 199 | 32,412 | 98,330 | 23,075 | 53,165 |
MCF-7 | 466 | 3,475 | 90 | 180 | 42,738 | 121,544 | 27,267 | 57,676 |
SK-BR-3 | 703 | 9,354 | 152 | 577 | 86,249 | 241,219 | 61,494 | 130,682 |