Table 1 Annotation and expression of chicken W chromosome genes.
Gene | Description | Genomic Location | Expression (FPKM) Female | % ID with paralog | dN/dS | ||
|---|---|---|---|---|---|---|---|
Blastoderms | E4.5 Gonads | DNA | Protein | ||||
ATP5A1-W | ATP synthase subunit alpha | ChrW W_random | 101 | 155 | 89.3 | 95.4 | 0.280 |
BTF3-W | Transcription factor BTF3-like | Autosome | 86.3 | 141 | 90.9 | 94.4 | 0.160 |
C18ORF25-W | Uncharacterized protein C18ORF25 | ChrW W_random ChrUn | 0.874 | 3.93 | 90.3 | 83.7 | 0.434 |
CHD1-W | Chromodomain helicase DNA binding protein | ChrW W_random autosomal | 6.81 | 9.35 | 86.8 | 88.1 | 0.126 |
FAF | Female Associated Factor | ChrW W_random | 15 | 21.2 | |||
GOLPH3-W | Golgi phosphoprotein 3-like | ChrUn | 2.82 | 24.9 | 92.7 | 95.6 | 0.080 |
HINT-W | Histidine triad nucleotide binding protein | ChrW W_random | 1780 | 1170 | 41.0 | 48.5 | 0.608 |
HNRPK-W | Heterogeneous nuclear ribonucleoprotein K | ChrUn | 103 | 100 | 94.2 | 99.3 | 0.040 |
KCMF1-W | E3 ubiquitin-protein ligase KCMF1-like | ChrW W_random | 10.1 | 21.6 | 92.0 | 93.2 | 0.181 |
MIER3-W | Mesoderm induction early response 3 | ChrUn | 7.42 | 19.9 | 92.9 | 92.5 | 0.265 |
NEDD4-like-W | Neural precursor cell expressed developmentally downregulated 4-like | ChrUn | 0.048 | 1.92 | 82.4 | 83.0 | 0.209 |
NIPBL-W/SCC2-W | Nipped B/sister chromatid cohesion 2 | ChrW W_random | 7.78 | 7.39 | 89.9 | 90.0 | 0.148 |
RASA1-W | Ras GTPase-activating protein 1-like | ChrW W_random ChrUn | 2.77 | 10.5 | 81.4 | 89.4 | 0.132 |
RPL17-W | Ribosomal protein 17 | ChrUn | 368 | 332 | 96.7 | 100.0 | 0.000 |
SMAD2-W | Mothers against decapentaplegic homolog 2-like | ChrW W_random | 19.2 | 30 | 92.4 | 96.4 | 0.024 |
SMAD7-W | TGF-beta signal pathway antagonist Smad7 | ChrUn | 4.47 | 4.95 | 93.8 | 93.6 | 0.208 |
SPIN-W | Spindlin | ChrW W_random | 1.8 | 10.6 | 95.7 | 98.5 | 0.045 |
ST8SIA3-W | Sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R: alpha 2,8-sialyltransferase-like | ChrW W_random | 4.31 | 3.16 | 94.7 | 95.7 | 0.105 |
SUB1-W | Activated RNA polymerase II transcriptional coactivator p15-like | ChrUn | 11.6 | 26.6 | 94.5 | 96.0 | 0.097 |
TXN-like1-W | thioredoxin | ChrUn | 7.16 | 19.6 | 94.5 | 95.2 | 0.144 |
UBAP2-W | Ubiquitin associated protein 2 | ChrW W_random | 16.3 | 11.9 | 92.1 | 89.6 | 0.263 |
UBE2R2-W | Ubiquitin-conjugating enzyme E2R 2 | ChrW W_random | 5.38 | 17.4 | 94.4 | 100.0 | 0.000 |
VCP-like-W | Valosin containing protein | ChrUn | 64.4 | 128 | 95.5 | 99.9 | 0.003 |
ZFR-W | Zinc finger RNA-binding protein | Autosome ChrUn | 4.47 | 7.51 | 93.8 | 94.1 | 0.172 |
ZNF532-W | Zinc finger protein 532-like | autosome | 3.52 | 5.59 | 94.0 | 94.0 | 0.181 |
ZSWIM6-W | Zinc finger SWIM domain-containing protein 6-like | ChrW W_random autosome ChrUn | 0.54 | 4.73 | 91.7 | 92.4 | 0.172 |
Mir-7b-W | MicroRNA 7b (in intron of HNRPK-W) | ChrUn | unknown | unknown | 93.6 | ||
SNORD58-W 1 | Small nucleolar RNA SNORD58 (in intron of RPL17-W) | ChrUn | unknown | unknown | 97.0 | ||
SNORD58-W 2 | Small nucleolar RNA SNORD58 (in intron of RPL17-W) | ChrUn | unknown | unknown | 89.7 | ||
SNORD121A-W 1 | Small nucleolar RNA SNORD121A (in intron of UBAP2-W) | ChrW W_random | unknown | unknown | 90.6 | ||
SNORD121A-W 2 | Small nucleolar RNA SNORD121A (in intron of UBAP2-W) | ChrW W_random | unknown | unknown | 90.4 | ||