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Table 2 Likelihoods of GAGE assemblies of S. aureus

From: CGAL: computing genome assembly likelihoods

Assembler Likelihood Number of reads mapped Coverage (%) Scaffold N50 (kb) Contig N50 (kb)
ABySS -23.34 × 107 1236230 99.74a 34 29.2
ALLPATHS-LG -24.53 × 107 1220328 99.38 1092 96.7
Bambus2 -23.76 × 107 1200527 98.68 1084 50.2
MSR-CA -25.85 × 107 1192001 98.70 2412 59.2
SGA -26.61 × 107 1018936 98.09 208 4.0
SOAPdenovo -23.55 × 107 1212384 99.62 332 288.2
Velvet -23.28 × 107 1203907 99.21 762 48.4
Reference -22.38 × 107 1268718 - - -
  1. a Value reported in original paper is 98.63.