Figure 1

MetAMOS workflow. The arrows indicate dependence between pipeline steps. MetAMOS leverages over 20 existing analysis tools for various steps in the pipeline. The figure also highlights the novel contributions to metagenomic analysis made by MetAMOS. Miller et al. 2008 [33]; Peng et al. 2011 [25]; Namiki et al. 2011 [24]; Sommer et al. 2008 [40]; Margulies et al. 2005 [99]; Li et al. 2010 [51]; Zerbino et al. 2008 [63]; Chitsaz et al. 2011 [64]; Langmead et al. 2010 [49]; Langmead et al. 2012 [50]; Zhu et al. 2010 [100]; Rho et al. 2010 [68]; Kelley et al. 2012 [69]; Treangen et al. 2009 [75]; Altschul et al. 1990 [66]; Liu et al. 2011 [52]; Eddy et al. 2011 [67]; Brady et al. 2011 [14]; Parks et al. 2011 [22]; Koren et al. 2011 [30]; Ondov et al. 2011 [46].