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Table 1 Comparison of performance of methods with respect to identifying the four inversions on Venter chromosome 17

From: An integrative probabilistic model for identification of structural variation in sequencing data

Method Minimum number to detect 3 Minimum number to detect 4
High quality alignments   
   Breakdancer 3 NA
   GASV 3 NA
   GASVPro-HQ 3 NA
   Hydra-HQ 4 NA
All alignments   
   GASVPro 3 4
   Hydra 5 10
  1. GASVPro is the only method with perfect specificity and sensitivity, detecting all four inversions with no false positive predictions. NA, not applicable.