Table 1 Distribution of peptides derived from a representative selection of known nuclear proteins across the three IDC stages.

Histones

PFF0860c

histone H2A

1

1

1

7

1

3

12

3

5

7

4

8

1

1

3

PFC0920w

histone H2A.Z

2

2

9

4

6

8

3

5

4

3

4

PF11_0062

histone H2B

2

1

7

2

9

36

7

10

12

14

22

9

7

12

PF07_0054

histone H2B variant

2

1

1

3

17

9

4

12

7

15

8

5

7

PFF0510w

histone H3

1

4

8

4

7

2

PFF0865w

histone H3 variant

1

3

PF13_0185

histone H3, CENP-A variant

3

2

PF11_0061

histone H4

1

3

2

3

1

7

10

3

4

15

13

22

8

6

13

DNA-directed RNA polymerase II complex

PFC0805w

DNA-directed RNA pol II, putative

4

8

31

5

4

4

PFI1130c

DNA-directed RNA pol II, putative

1

6

2

PF10_0269

DNA-directed RNA pol II, putative

1

2

PFB0715w

DNA-directed RNA pol II 2nd largest subunit, putative

1

18

4

2

PFL0665c

RNA polymerase subunit 8c, putative

1

PFB0245c

DNA-directed RNA pol II 16 kDa subunit, putative

2

PF13_0341

DNA-directed RNA pol II, putative

3

1

PFA0505c

DNA-directed RNA pol II, putative

1

1

PF13_0023

DNA-directed RNA pol II, putative

3

2

PF07_0027

DNA-directed RNA pol II 8.2 kDa polypeptide, putative

1

ApiAP2 transcription factors

PFF0200c

PfSIP2

1

7

PFE0840c

transcription factor with AP2 domain(s), putative

3

1

PFD0985w

transcription factor with AP2 domain(s), putative

1

1

PF11_0404

transcription factor with AP2 domain(s), putative

1

6

PF10_0075

transcription factor with AP2 domain(s), putative

3

9

4

3

2

8

10

PF14_0471

transcription factor with AP2 domain(s), putative

4

1

4

5

PF14_0633

transcription factor with AP2 domain(s), putative

1

2

2

2

6

6

PF14_0533

transcription factor with AP2 domain(s), putative

1

3

PF11_0091

transcription factor with AP2 domain(s), putative

2

9

1

2

1

5

PFL1900w

transcription factor with AP2 domain(s), putative

29

2

14

21

PFF0670w

transcription factor with AP2 domain(s), putative

4

2

3

35

PF14_0079

transcription factor with AP2 domain(s), putative

1

MAL8P1.153

transcription factor with AP2 domain(s), putative

4