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Table 1 Distribution of peptides derived from a representative selection of known nuclear proteins across the three IDC stages.

From: Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum

Protein ID Product description Fraction 1 Fraction 2 Fraction 3 Fraction 4 Fraction 5
   R T S R T S R T S R T S R T S
  Histones
PFF0860c histone H2A 1 1 1 7 1 3 12 3 5 7 4 8 1 1 3
PFC0920w histone H2A.Z     2   2 9 4 6 8 3 5 4 3 4
PF11_0062 histone H2B 2 1   7 2 9 36 7 10 12 14 22 9 7 12
PF07_0054 histone H2B variant 2 1   1   3 17 9 4 12 7 15 8 5 7
PFF0510w histone H3     1    4    8 4 7 2   
PFF0865w histone H3 variant        1      3    
PF13_0185 histone H3, CENP-A variant           3   2    
PF11_0061 histone H4 1 3 2 3 1 7 10 3 4 15 13 22 8 6 13
  DNA-directed RNA polymerase II complex
PFC0805w DNA-directed RNA pol II, putative 4          8 31 5 4 4  
PFI1130c DNA-directed RNA pol II, putative           1 6 2    
PF10_0269 DNA-directed RNA pol II, putative         1    2     
PFB0715w DNA-directed RNA pol II 2nd largest subunit, putative           1 18 4   2  
PFL0665c RNA polymerase subunit 8c, putative            1     
PFB0245c DNA-directed RNA pol II 16 kDa subunit, putative            2     
PF13_0341 DNA-directed RNA pol II, putative            3 1    
PFA0505c DNA-directed RNA pol II, putative           1 1     
PF13_0023 DNA-directed RNA pol II, putative            3 2    
PF07_0027 DNA-directed RNA pol II 8.2 kDa polypeptide, putative            1     
  ApiAP2 transcription factors
PFF0200c PfSIP2          1       7
PFE0840c transcription factor with AP2 domain(s), putative      3          1  
PFD0985w transcription factor with AP2 domain(s), putative              1 1  
PF11_0404 transcription factor with AP2 domain(s), putative         1       6  
PF10_0075 transcription factor with AP2 domain(s), putative     3 9     4   3   2 8 10
PF14_0471 transcription factor with AP2 domain(s), putative      4         1 4 5
PF14_0633 transcription factor with AP2 domain(s), putative      1    2 2     2 6 6
PF14_0533 transcription factor with AP2 domain(s), putative               1 3
PF11_0091 transcription factor with AP2 domain(s), putative     2 9 1    2      1 5
PFL1900w transcription factor with AP2 domain(s), putative      29    2       14 21
PFF0670w transcription factor with AP2 domain(s), putative          4     2 3 35
PF14_0079 transcription factor with AP2 domain(s), putative               1  
MAL8P1.153 transcription factor with AP2 domain(s), putative                4
  1. Indicated are the numbers of unique tryptic peptides measured for each protein in each fraction and IDC stage, derived from either replicate A or B, whichever displayed the higher number of unique peptides. R, ring stages; S, schizonts; T, trophozoites;.