| Repeat length | Repeat length (>300) | Repeat length (>700) | |||
---|---|---|---|---|---|---|
 | R2 | P-value | R2 | P-value | R2 | P-value |
6XSE+10XPE, 400bp | Â | Â | Â | Â | Â | Â |
  Number of Contigs | 0.5657 | 2.2E-16 | 0.7842 | 2.2E-16 | 0.7948 | 2.2E-16 |
  N50 size of Contigs | 0.07932 | 0.00453 | 0.1107 | 0.00072 | 0.1114 | 0.0006918 |
  Genome coverage | 0.1298 | 0.0002314 | 0.2295 | 4.591E-07 | 0.2545 | *.732E-08 |
  SNP error rate | 0.04819 | 0.0282 | 0.09175 | 0.002189 | 0.08484 | 0.003282 |
  Indel error rate | 0.002337 | 0.6329 | 0.04038 | 0.53 | 0.003728 | 0.5462 |
  se gene duplication | 0.2951 | 5.227E-09 | 0.2969 | 4.598E-09 | 0.2158 | 0.000001124 |
  False gene loss rate | 0.1978 | 0.00003553 | 0.338 | 2.264E-10 | 0.3408 | 1.827E-10 |
  Number of Scaffolds | 0.3363 | 2.565E-10 | 0.462 | 7.497E-15 | 0.4845 | 9.023E-16 |
10XSE+10XPE, 400bp | Â | Â | Â | Â | Â | Â |
  Number of Contigs | 0.4762 | 2E-15 | 0.6908 | 2.2E-16 | 0.7164 | 2.2E-16 |
  N50 size of Contigs | 0.05194 | 0.02258 | 0.09437 | 0.001878 | 0.09966 | 0.001377 |
  Genome coverage | 0.1185 | 0.0004542 | 0.2119 | 0.000001443 | 0.2358 | 0.000000305 |
  SNP error rate | 0.02702 | 0.1022 | 0.06257 | 0.01207 | 0.06363 | 0.01134 |
  Inde1 error rate | 0.0006153 | 0.8065 | 0.001432 | 0.7085 | 0.001119 | 0.7411 |
  se gene duplication | 0.3133 | 1.414E-09 | 0.324 | 6.457E-10 | 0.2426 | 1.936E-07 |
  False gene loss rate | 0.1232 | 0.0003429 | 0.2021 | 0.000002708 | 0.1943 | 0.000004425 |
  Number of Scaffolds | 0.2813 | 1.384E-08 | 0.4074 | 9.141E-13 | 0.4424 | 4.417E-14 |
15XSE+10XPE, 400bp | Â | Â | Â | Â | Â | Â |
  Number of Contigs | 0.453 | 1.709E-14 | 0.6676 | 2.2E-16 | 0.7008 | 2.2E-16 |
  N50 size of Contigs | 0.01038 | 0.3131 | 0.07265 | 0.006691 | 0.07771 | 0.004978 |
  Genome coverage | 0.1149 | 0.0005616 | 0.02068 | 0.00002001 | 0.2323 | 3.837E-07 |
  SNP error rate | 0.0001226 | 0.913 | 0.0004724 | 0.83 | 0.0002939 | 0.8656 |
  Inde1 error rate | 0.0001226 | 0.913 | 0.0004724 | 0.83 | 0.0002939 | 0.8656 |
  se gene duplication | 0.3217 | 7.638E-1C | 0.3318 | 3.595E-10 | 0.2468 | 1.465E-07 |
  False gene loss rate | 0.1541 | 0.00005366 | 0.2604 | 5.834E-08 | 0.2642 | 4.519E-08 |
  Number of Scaffolds | 0.4023 | 1.399E-12 | 0.5996 | 2.2E-16 | 0.5878 | 2.2E-16 |
6XSE+10XPE, 400bp | Â | Â | Â | Â | Â | Â |
  Number of Contigs | 0.448 | 2.696E-14 | 0.6554 | 2.2E-16 | 0.6869 | 2.2E-16 |
  N50 size of Contigs | 0.05142 | 0.02328 | 0.09641 | 0.001666 | 0.1006 | 0.001301 |
  Genome coverage | 0.1152 | 0.000551 | 0.2076 | 0.000019 | 0.2338 | 3.467E-07 |
  SNP error rate | 0.2124 | 0.000001398 | 0.3199 | 8.7E-10 | 0.3315 | 3.678E-10 |
  Inde1 error rate | 0.00001646 | 0.968 | 0.00016 | 0.9006 | 0.00006389 | 0.937 |
  se gene duplication | 0.3492 | 9.627E-11 | 0.3761 | 1.182E-11 | 0.2922 | 6.453E-09 |
  False gene loss rate | 0.1163 | 0.000515 | 0.2011 | 0.000002892 | 0.1938 | 0.000004569 |
  Number of Scaffolds | 0.3125 | 1.495E-09 | 0.458 | 1.09E-14 | 0.4898 | 5.431E-16 |