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Table 3 Validation outcomes and rates of the Exon Pilot SNP variant calls

From: The functional spectrum of low-frequency coding variation

 

AC = any

AC = any

AC = 1

AC = 2 to 5

Totals

Samples

All 697

CEU + CHB + YRI

All 697

All 697

 

Series

Series 1

Series 2

Series 3+4

Series 3 + 4

Series 1 to 4

Variant

92

122

166

164

544

Non-variants

3

3

11

2

19

Validation rate

96.8%

97.6%

93.8%

98.8%

96.6%

  1. Outcomes and rates are reported for various alternate allele count (AC) ranges.
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Genome Biology

ISSN: 1474-760X

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