| |
CpG specific transition rate
|
CpG transition rate
|
|---|
|
Levels of the one-way ANOVA
|
Estimate
|
P-value
|
Estimate
|
P-value
|
|---|
|
Intercept
|
-0.0708
|
1.04e-03**
|
-0.1730
|
6.82e-15***
|
|
Chromosome 1
|
0.0638
|
1.58e-02*
|
0.1531
|
1.83e-08***
|
|
Chromosome 2
|
0.0565
|
3.32e-02*
|
0.1567
|
9.46e-09***
|
|
Chromosome 3
|
0.0870
|
1.21e-03**
|
0.1809
|
5.97e-11***
|
|
Chromosome 4
|
0.0644
|
2.46e-02*
|
0.1759
|
2.37e-09***
|
|
Chromosome 5
|
0.0437
|
1.20e-01
|
0.1374
|
2.03e-06***
|
|
Chromosome 6
|
0.0579
|
4.94e-02*
|
0.1666
|
3.86e-08***
|
|
Chromosome 7
|
0.0330
|
2.97e-01
|
0.1293
|
6.84e-05***
|
|
Chromosome 8
|
-0.0036
|
9.08e-01
|
0.1382
|
1.53e-05***
|
|
Chromosome 9
|
0.0942
|
2.71e-03**
|
0.1890
|
4.94e-09***
|
|
Chromosome 10
|
0.0871
|
2.95e-03**
|
0.1864
|
6.22e-10***
|
|
Chromosome 11
|
0.0988
|
1.44e-03**
|
0.1911
|
2.09e-09***
|
|
Chromosome 12
|
0.0555
|
6.11e-02
|
0.1345
|
1.03e-05***
|
|
Chromosome 13
|
0.0625
|
8.53e-02
|
0.1501
|
5.88e-05***
|
|
Chromosome 14
|
0.0005
|
8.88e-01
|
0.0900
|
9.89e-03**
|
|
Chromosome 15
|
0.0333
|
9.87e-01
|
0.1376
|
2.74e-05***
|
|
Chromosome 16
|
0.0630
|
1.13e-01
|
0.1707
|
2.92e-05***
|
|
Chromosome 17
|
-0.0011
|
9.74e-01
|
0.1144
|
1.33e-03**
|
|
Chromosome 18
|
0.0862
|
1.92e-02*
|
0.1901
|
5.02e-07***
|
|
Chromosome 19
|
-0.0118
|
8.68e-01
|
0.1157
|
1.15e-01
|
|
Chromosome 20
|
-0.0077
|
8.46e-01
|
0.0756
|
6.28e-02
|
|
Chromosome 21
|
0.1033
|
5.49e-02
|
0.2319
|
2.76e-05***
|
|
Chromosome 22
|
0.0288
|
6.00e-01
|
0.1228
|
2.99e-02*
|
- CpG-specific transition rate is corrected for among-chromosomes variation in divergence, GC content, DNA methylation and transcription level; CpG transition rate is only corrected for variation in GC content, DNA methylation and transcription level among chromosomes. Estimates and P-values of a one-way ANOVA are listed, where the contrasts are based on the X chromosome. P-values are marked with asterisks to highlight their significance level, where single, double and triple asterisks indicate P-values below a threshold of 0.05, 0.01 and 0.001, respectively.
