Table 1 Frequencies of BAC end sequences and Sanger shot gun sequences matching sequences in Repbase
Type | Absolute number in BESs | Percentage BESs | Percentage repeats in BESs | Absolute number in SGSs | Percentage SGSs | Percentage repeats in SGSs |
|---|---|---|---|---|---|---|
DNA TEs | Â | Â | Â | Â | Â | Â |
   hAT | 642 (1,671) | 0.92 (2.41) | 6.84 (4.61) | 20 (41) | 0.74 (1.52) | 5.73 (2.94) |
   MuDR | 343 (724) | 0.49 (1.04) | 3.65 (2.00) | 7 (30) | 0.26 (1.11) | 2.00 (2.15) |
   CACTA | 27 (75) | 0.04 (0.11) | 0.29 (0.21) | 0 (4) | 0 (0.15) | 0 (0.29) |
   Helitrons | 12 (69) | 0.02 (0.10) | 0.13 (0.19) | 0 (3) | 0 (0.11) | 0 (0.22) |
   Other | 108 (595) | 0.15 (0.86) | 1.15 (1.64) | 1 (24) | 0.04 (0.89) | 0.29 (1.72) |
   Total | 1,132 (3,134) | 1.63 (4.51) | 12.06 (8.64) | 28 (102) | 1.04 (3.78) | 8.02 (7.31) |
Retrotransposons | Â | Â | Â | Â | Â | Â |
   LTR Ty1-copia | 2,162 (9,578) | 3.11 (13.79) | 23.02 (26.42) | 64 (314) | 2.37 (11.65) | 18.34 (22.51) |
   LTR Ty3-gypsy | 2,431 (8,395) | 3.50 (12.09) | 25.89 (23.15) | 129 (377) | 4.78 (13.98) | 36.96 (27.03) |
   LTR not classified | 720 (2,868) | 1.04 (4.13) | 7.67 (7.91) | 51 (139) | 1.89 (5.16) | 14.61 (0.96) |
   LINEs | 1,876 (8,055) | 2.70 (11.60) | 19.98 (22.22) | 55 (294) | 2.04 (10.91) | 15.76 (21.08) |
   SINEs | 11 (183) | 0.02 (0.26) | 0.12 (0.50) | 0 (4) | 0 (0.15) | 0 (0.29) |
   Retro not classified | 1,058 (4,046) | 1.52 (5.82) | 11.27 (11.16) | 23 (165) | 0.85 (6.12) | 6.59 (11.83) |
   Total | 8,258 (33,125) | 11.89 (47.69) | 87.94 (91.36) | 321 (1,293) | 11.91 (47.96) | 91.98 (92.69) |
Total | 9,390 (36,259) | 13.52 (52.20) | 100 (100) | 349 (1,395) | 12.95 (51.74) | 100 (100) |