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Table 2 mmseq performance. Performance of the mmseqprogram on subsets of different sizes of the HapMap paired-end dataset.

From: Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads

Read pairs (millions) Dimension of M Runtime (seconds)
1 63,924 × 68,666 507
2 84,417 × 75,649 541
3 97,576 × 79,035 746
4 107,344 × 81,289 793
8 134,489 × 86,528 1,047
16 166,100 × 91,023 1,204
  1. Where necessary in order to obtain a large enough dataset, reads from multiple lanes of the same individual were pooled. The program exhibits economies of scale because the dimension of M increases more slowly than the number of reads.