Making computation accessible
| | | |
Unified, web-based tool interface
|
All tool interface share same style and use web components; tool interfaces are generated from tool configuration file
|
Same functions as Galaxy
|
Same functions as Galaxy
|
Simple tool integration
|
Tool developers can integrate tools by writing a tool configuration file and including tool file in Galaxy configuration file
|
Similar but not as flexible tool configuration file; easy installation of selected tools via a web-based interface
|
Remote services can be added using a server configuration file
|
Integrated datasources
|
Transparent access to established data warehouses
|
No similar functions
|
No similar functions
|
Ensuring reproducibility
| | | |
Automatic metadata
|
Provenance, inputs, parameters, and outputs for each tool used; analysis steps grouped into histories
|
Same functions as Galaxy
|
Same functions as Galaxy
|
User tags
|
Can apply short tags to histories, datasets, workflows, and pages; tags are searchable and facilitate reuse
|
No similar functions
|
No similar functions
|
User annotations
|
Can add descriptions or notes to histories, datasets, workflows, workflow steps, and pages to aid in understanding analyses
|
Cannot annotate a history but can annotate a workflow (pipeline) with an external document
|
No similar functions
|
Creating and running workflows
|
Can create, either by example or from scratch, a workflow that can be repeatedly used to perform a multi-step analysis
|
Same functions as Galaxy, although editor is form-based rather than graphical
|
In development
|
Workflow metadata
|
Automatic documentation is generated when a workflow is run; users can also tag and annotate workflows and workflow steps
|
Same functions as Galaxy for generating automatic metadata; cannot annotate workflow steps
|
In development
|
Promoting transparency
| | | |
Sharing model
|
Datasets, histories, workflows, and Pages can be shared at progressive levels and published to Galaxy's public repositories; datasets have more advanced sharing options, including groups
|
Can share analyses and workflows with individuals or groups
|
No similar functions
|
Item reuse, display framework and public repositories
|
Shared or published items displayed as webpages and can be imported and used immediately; public repositories can be searched; archives of analyses and workflows for sharing between servers are under development
|
Can create an archive of an analysis or workflow and share that with others; author information is included in archive
|
Can create an archive of an analysis and share that with others
|
Pages with embedded items
|
Can create custom webpages with embedded Galaxy items; each page can document a complete experiment, providing all details and supporting reuse of experiment's outputs
|
Microsoft Word plugin enables users to embed analyses and workflows in Word documents
|
No similar functions
|
Coupling between analysis workspace and publication workspace
|
Can import and immediately start using any shared, published, or embedded item without leaving web browser or Galaxy
|
Can run embedded analyses and save results in Microsoft Word documents
|
No similar functions
|