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Figure 4 | Genome Biology

Figure 4

From: ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

Figure 4

Span distribution of intra-chromosomal PETs and the cutoff between self-ligation PETs and inter-ligation PETs. (a) The distribution of the intra-chromosomal PET genomic spans. (b) The log-log plot of interaction frequencies against PET span, and the cutoff between self-ligation PETs and inter-ligation PETs. (c) Agarose gel of chromatin DNA fragments prepared for ChIA-PET analysis. Selected DNA sizes are marked.

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