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Table 2 Benchmark comparison on 150 yeast ChIP-chip datasets

From: Evidence-ranked motif identification

Motif finder Number of successes top 4
Trawler 52 (43)
YMF 57 (38)
AlignACE 64 (44)
MEME 76 (47)
Weeder 78 (53)
Amadeus 90 (63)
ERMIT 92 (61)
cERMIT 114 (66)
  1. Comparison of cERMIT with other motif finders on the yeast dataset of 150 ChIP-chip experimental conditions corresponding to 77 unique transcription factors (adapted after [25]). In brackets are reported the number of unique transcription factors corresponding to the number of conditions recovered by each of the methods.