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Table 1 Benchmark comparison on 156 yeast ChIP-chip datasets

From: Evidence-ranked motif identification

Motif finder

Number of successes top 1

AlignACE

16

MEME

35

MEME-c

49

Kellis

50

Converge

56

PRIORITY-C

69

MD-scan

54

PRIORITY-DC

78

ERMIT

75

cERMIT

87

  1. Comparison of cERMIT with other motif finders on the yeast dataset of 156 ChIP-chip experimental conditions corresponding to 80 unique transcription factors (adapted after [21]).