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Table 1 Benchmark comparison on 156 yeast ChIP-chip datasets

From: Evidence-ranked motif identification

Motif finder Number of successes top 1
AlignACE 16
MEME 35
MEME-c 49
Kellis 50
Converge 56
PRIORITY-C 69
MD-scan 54
PRIORITY-DC 78
ERMIT 75
cERMIT 87
  1. Comparison of cERMIT with other motif finders on the yeast dataset of 156 ChIP-chip experimental conditions corresponding to 80 unique transcription factors (adapted after [21]).