Table 3 Top ten Gene Ontology categories using the standard method
From: Gene ontology analysis for RNA-seq: accounting for selection bias
GOID | Term | Ontology | Rank standard | Rank GOseq | Median read count of genes in category |
|---|---|---|---|---|---|
GO:0005515 | Protein binding | MF | 1 | 11 | 206 |
GO:0005737 | Cytoplasm | CC | 2 | 111 | 238 |
GO:0005634 | Nucleus | CC | 3 | 4,303 | 228 |
GO:0000166 | Nucleotide binding | MF | 4 | 2,546 | 252 |
GO:0005829 | Cytosol | CC | 5 | 1,192 | 349 |
GO:0005783 | Endoplasmic reticulum | CC | 6 | 6 | 197 |
GO:0003677 | DNA binding | MF | 7 | 2,109 | 189 |
GO:0005794 | Golgi apparatus | CC | 8 | 26 | 213 |
GO:0005622 | Intracellular | CC | 9 | 3,592 | 187 |
GO:0016874 | Ligase activity | MF | 10 | 88 | 353 |