Homoeolog-specific retention and use in allotetraploid Arabidopsis suecica depends on parent of origin and network partners

Table 1 Regions of putative alterations in Arabidopsis suecica

Chromosome	Region	Number of genes	Percent with differential hybridization	Percent TEs	Number of probes	Higher hybridization in?
AT1	0.29 M-0.39 M	38	44.7	0	2,537	F ₁ As
	0.82 M-0.91 M	32	28.1	3.1	2,266	F ₁ As
	3.16 M-3.29 M	43	37.2	0	3,175	As
	8.40 M-8.49 M	37	29.7	2.7	1,991	F ₁ As
	13.66 M-13.86 M	43	58.1	51.2	3,547	F ₁ As
	14.00 M-14.39 M	70	42.9	51.4	5,998	F ₁ As
	29.97 M-30.07 M	40	32.5	0	2,536	F ₁ As
AT2	1.96 M-2.03 M	34	32.4	8.8	1,377	As
	4.57 M-4.69 M	30	30.0	36.7	2,302	F ₁ As
	6.50 M-6.67 M	43	27.9	16.3	3,214	As
	10.88 M-11.01 M	38	26.3	0	3,182	As
	14.74 M-14.84 M	37	27.0	0	2,440	F ₁ As
	19.60 M-19.68 M	36	38.9	0	2,065	F ₁ As
AT3	0.30 M-0.36 M	33	42.4	0	1,568	F ₁ As
	5.58 M-5.68 M	32	46.9	0	2,299	As
	7.30 M-7.38 M	31	32.3	16.1	1,822	F ₁ As
	12.44 M-12.61 M	36	27.8	61.1	3,055	F ₁ As
	13.36 M-13.50 M	34	55.9	50.0	2,431	As
	14.55 M-14.70 M	39	38.5	33.3	2,904	As
	20.25 M-20.34 M	31	32.3	3.2	2,165	F ₁ As
	20.93 M-21.00 M	30	30.0	0	1,881	F ₁ As
	21.30 M-21.43 M	44	34.1	2.3	3,227	F ₁ As
	21.60 M-21.73 M	45	44.4	0	3,217	F ₁ As
	22.11 M-22.22 M	37	29.7	0	2,520	F ₁ As
	22.98 M-23.46 M	198	79.8	2.0	12,309	F ₁ As
AT4	1.13 M-1.33 M	59	28.8	1.7	4,967	As
	1.60 M-1.78 M	33	57.6	39.4	2,762	F ₁ As
	7.59 M-7.68 M	34	29.4	2.9	2,052	As
	7.67 M-7.82 M	47	23.4	21.3	3,232	As
	16.89 M-16.96 M	32	34.4	0	1,797	As
	17.86 M-17.95 M	39	38.5	0	2,000	F ₁ As
AT5	9.92 M-10.11 M	44	43.2	22.7	4,269	As
	11.06 M-11.27 M	42	45.2	59.5	2,948	F ₁ As
	13.76 M-13.89 M	38	36.8	18.4	2,785	As
	18.49 M-18.61 M	33	30.3	0	2,882	As
	20.53 M-20.70 M	34	29.4	2.9	2,621	As
	23.48 M-23.56 M	33	30.3	0	1,991	F ₁ As
	26.41 M-6.47 M	34	29.4	0	1,453	F ₁ As
ATM	0.02 M-.24 M	30	50.0	0	1,447	F ₁ As

ISSN: 1474-760X