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Table 2 Quantitative analysis of female fibroblast RNA-FISH data

From: Activity map of the tammar X chromosome shows that marsupial X inactivation is incomplete and escape is stochastic

 

Percent female nuclei with

Genes on BACs or fosmids

2 signals

1 signal

0 signals

G6PD , IKBKG

17.0

82.0

1.0

TMLHE

29.0

68.0

3.0

RPL10X

27.0

71.0

2.0

MECP2X , IRAK1 , TMEM187

41.0

54.0

5.0

HCFC1X

7.0

91.0

2.0

AR

9.0

87.0

4.0

PSMD10

6.7

93.3

0.0

STAG2

6.7

92.0

1.3

HPRT, PHF6X

23.5

73.5

3.1

UPF3B

11.7

86.7

1.7

PGK1

18.5

80.4

1.1

ATRX

59.8

39.2

1.0

RBMX

11.0

87.0

2.0

UBA1, RBM10

67.8

32.2

0.0

TBC1D25, GATA1

14.3

84.7

1.0

GATA1, WDR13

14.9

81.3

3.7

GLA, GLRA4

7.5

89.2

3.2

KDM5C

35.0

65.0

0.0

HUWE1X

15.0

85.0

0.0

AKAP4

44.1

51.0

4.9

AMOT

23.0

71.7

5.3

LRCH2

5.2

92.8

2.1

WDR44

14.3

81.6

4.1

  1. Frequency of nuclei with 2, 1 or 0 signals for each X-borne locus. At least 100 nuclei were scored. Only nuclei with two signals for the autosomal control gene, and therefore diploid, were scored. Male efficiencies were used to calculate the expected frequency of nuclei with two signals, one signal and no signal for each test gene. Expected frequencies of cells with two signals were in excess of 90% for all loci, and observed frequencies were significantly different from these expected frequencies in every case (Chi-square test with 2 degrees of freedom). Genes highlighted in bold were used in sequential RNA-DNA FISH experiments.