Table 3 Selected list of allele-specific expression genes detected in the HCC1954 cell line
Gene | Number of reads ratio major/minor | Chr. | Gene product | Non-ASE P-value | Known SNV ID |
|---|---|---|---|---|---|
CTBP2 | 404/0 | 10 | C-terminal binding protein 2 | 0.000 | 3 novel SNVs |
| Â | 415/1 | Â | Â | Â | Â |
| Â | 395/0 | Â | Â | Â | Â |
HLA-A | 267/4 | 6 | Major histocompatibility complex, class I, A | 0.000 | rs2231114 |
| Â | 546/0 | Â | Â | 0.000 | rs1059517 |
TAOK1 | 223/16 | 17 | TAO kinase 1 | 0.000 | rs508706 |
PLAU | 140/0 | 10 | Plasminogen activator, urokinase | 0.000 | rs2227568 |
PODXL2 | 124/1 | 3 | Podocalyxin-like 2 | 0.000 | rs920232 |
ITGB2 | 53/2 | 21 | Integrin, beta 2 | 0.000 | rs11088969 |
LXN | 45/1 | 3 | Latexin | 0.000 | rs8455 |
SNUPN | 48/2 | 15 | Snurportin 1 | 0.000 | rs11547316 |
RAB3A | 50/5 | 19 | RAB3A, member RAS oncogene family | 0.000 | rs1046565 |
KIN | 31/0 | 10 | KIN, antigenic determinant of recA protein homolog (mouse) | 0.000 | rs61752337 |
GLB1L2 | 26/0 | 11 | Galactosidase, beta 1-like 2 | 0.000 | rs3741097 |
MGMT | 21/0 | 10 | O-6-methylguanine-DNA methyltransferase | 0.001 | rs2308327 |
PLEKHA6 | 340/1 | 1 | Pleckstrin homology domain containing, family A member 6 | 0.000 | rs33911350 |
THNSL2 | 36/0 | 2 | Threonine synthase-like 2 (S. cerevisiae) | 0.000 | rs35051888 |
LBP | 220/10 | 20 | Lipopolysaccharide binding protein | 0.000 | rs5744204 |
| Â | 123/6 | Â | Â | Â | rs2232582 |
| Â | 238/10 | Â | Â | Â | rs2232596 |
FGFR4 | 267/27 | 5 | Fibroblast growth factor receptor 4 | 0.000 | rs1966265 |
SLC44A5 | 57/0 | 1 | Solute carrier family 44, member 5 | 0.000 | rs17096508 |
| Â | 40/0 | Â | Â | Â | rs10493565 |
| Â | 31/0 | Â | Â | Â | rs588098 |
| Â | 41/0 | Â | Â | Â | Novel SNV |
FGFR2 | 44/0 | 10 | Fibroblast growth factor receptor 2 | 0.000 | rs1047100 |
SYTL5 | 48/2 | X | Synaptotagmin-like 5 | 0.000 | rs5918476 |
| Â | 30/3 | Â | Â | Â | rs4827330 |