Genetic diversity in India and the inference of Eurasian population expansion

Table 1 Genetic diversity in continental groups and populations

	*nInd*	S	Sp	θ	π(π10^-5)	H(π10^-5)	Hap Het	Tajima's D	P
Continent
India	152	533	237	84.70 (82.72-86.68)	83.68 (79.20-88.17)	77.53	0.89	-0.04	0.97
Africa	152	656	416	104.25 (101.82-106.68)	85.28 (80.71-89.86)	78.03	0.95	-0.57	0.57
Europe	152	535	205	85.02 (83.03-87.01)	74.64 (70.63-78.65)	67.95	0.88	-0.38	0.70
East Asia	152	436	186	69.29 (67.66-70.92)	73.61 (69.66-77.57)	73.10	0.90	0.19	0.85
Population
Brahmin	23	287	16	65.30 (59.72-70.88)	75.08 (64.51-85.64)	60.02	0.79	0.55	0.58
GIH	24	282	47	63.54 (58.27-68.81)	72.41 (62.45-82.38)	60.96	0.87	0.51	0.61
Irula	23	292	20	66.44 (60.76-72.12)	82.77 (71.13-94.40)	95.12	0.89	0.90	0.37
Mala/Madiga	24	342	46	77.06 (70.69-83.43)	84.46 (72.85-96.07)	89.33	0.87	0.35	0.73
Yadava	22	317	28	72.87 (66.45-79.29)	88.94 (76.15-101.73)	92.82	0.95	0.81	0.42
LWK	24	359	85	80.89 (74.21-87.57)	82.51 (71.17-93.86)	85.81	0.96	0.07	0.94
YRI	24	349	91	78.64 (72.14-85.14)	82.03 (70.75-93.31)	76.86	0.95	0.16	0.88
CEU	24	262	43	59.04 (54.13-63.94)	70.64 (60.91-80.37)	77.68	0.85	0.72	0.47
TSI	24	298	58	67.15 (61.58-72.71)	73.95 (63.78-84.13)	72.54	0.89	0.37	0.71
CHB	24	254	34	57.23 (52.47-61.99)	76.49 (65.97-87.01)	78.88	0.90	1.23	0.22
CHD	24	212	24	47.77 (43.78-51.76)	69.87 (60.24-79.49)	72.34	0.81	1.68	0.09
JPT	24	236	34	53.18 (48.75-57.61)	73.66 (63.52-83.80)	62.88	0.88	1.40	0.16

nInd, number of individuals; S, number of segregating sites; Sp, number of private segregating sites; θ, estimated theta (4N_eu) from S; π, nucleotide diversity; H, observed heterozygosity; Hap Het, averaged haplotype diversity over ten 10-kb windows; Tajima's D, Tajima's D; P, P-value for Tajima's D test. Confidence intervals of θ and π are shown in parentheses.

ISSN: 1474-760X