Table 2 Validation of polymorphism predictions in Est-1
From: Simultaneous alignment of short reads against multiple genomes
Graph analysis | Single-reference analysis | |||||
|---|---|---|---|---|---|---|
N a | Recallb | FDRc | Recallb | FDR† | ||
SNPs | 2,316 | 85.2% | 0.4% | 77.5% | 0.4% | |
Deletions | All | 183 | 53.6% | 2.0% | 38.8% | 2.7% |
1-3 bp | 132 | 68.2% | 2.2% | 53.8% | 2.7% | |
≥ 4 bp | 51 | 15.7% | 0.0 | 0 | n/a | |
Insertions | All | 167 | 53.9% | 2.2% | 45.5% | 1.3% |
1-3 bp | 128 | 66.4% | 2.3% | 59.4% | 1.3% | |
≥ 4 bp | 39 | 12.8% | 0.0 | 0 | n/a | |