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Table 3 Percentage of genes whose transcription start site is within 5 kb of ChIP/chip peaks

From: Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

Regulatory class Factor antibody % genes close to 1% FDR peaks % genes close to 25% FDR peaks
A-P early BCD 2 6.2 29.6
  CAD 1 12.6 48.9
  GT 2 7.7 27.2
  HB 1 14.7 34.5
  KNI 2 1.2 37.2
  KR 2 27.0 65.3
  HKB 1 9.0 41.3
  TLL 1 2.8 20.8
  D 1 52.6 84.1
A-P pair rule FTZ 3 2.6 29.1
  HRY 2 20.4 64.3
  PRD 1 14.8 51.0
  RUN 1 6.0 60.4
  SLP1 1 11.4 52.4
D-V DA 2 38.2 76.7
  DL 3 66.5 87.0
  MAD 2 1.6 73.5
  MED 2 50.6 74.8
  SHN 2 2.1 9.6
  SNA 2 23.6 83.0
  TWI 2 53.0 90.3
  1. For those factors for which ChIP/chip data are available for more than one antibody, values shown are for the antibody that gave the most bound regions above the 1% FDR threshold using the symmetric null test.