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Table 3 Summary of 24 S. cerevisiae ribosomal protein paralogs with largely nonhomologous intronic sequences despite relatively low levels of synonymous divergence

From: Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans

      I1 (bp)   I2 (bp)  
Duplicate pair K S 5' homology (bp) 3' homology (bp) E1 (bp) 5' H NH 3' H E2 (bp) 5' H NH 3' H E3 (bp)
YDL075W/YLR406C 0.3363 3 2 57 6 415/343 0 285   -   -
YMR230W/YOR293W 0.3132 15 1 52 8 400/427 2 266   -   -
YLR448W/YML073C 0.2992 10 2 15 6 375/406 3 516   -   -
YDL082W/YMR142C 0.2970 3 2 8 2 358/395 5 592   -   -
YGR034W/YLR344W 0.2841 0 1 19 6 68/438 3 365   -   -
YDL083C/YMR143W 0.2838 4 4 24 7 423/535 2 408   -   -
YBL027W/YBR084C 0.2698 3 0 2 6 370/492 8 568   -   -
YBR191W/YPL079W 0.2508 5 1 11 7 377/410 4 472   -   -
YMR242C/YOR312C 0.2504 5 0 1 2 467/416 8 518   -   -
YDR450W/YML026C 0.2491 4 1 47 8 424/390 3 394   -   -
YNL302C/YOL121C 0.2076 5 0 20 10 539/378 2 415   -   -
YLR287C-A/YOR182C 0.2022 5 0 3 6 420/401 4 189   -   -
YBR048W/YDR025W 0.1987 3 0 45 7 502/330 2 426   -   -
YNL301C/YOL120C 0.1955 1 0 112 6 424/439 2 449   -   -
YDR447C/YML024W 0.1896 3 0 3 6 298/382 10 408   -   -
YGR118W/YPR132W 0.1546 4 3 65 6 312/357 2 373   -   -
YIL018W/YFR031C-A 0.1523 2 0 4 6 391/138 3 761   -   -
YIL001W/YKL006W 0.1429 1 2 129 7 318/318 74 288   -   -
YER074W/YIL069C 0.1333 2 1 3 6 458/401 2 405   -   -
YGL076C/YPL198W 0.1196 5 0 11 6 451/400 12 94 7 456/395 5 630
YHR141C/YNL162W 0.0918 10 0 4 5 433/504 2 317   -   -
YJR145C/YHR203C 0.0854 6 1 14 7 247/260 2 772   -   -
YDL136W/YDL191W 0.0395 2 2 3 4 387/473 12 360   -   -
YBR181C/YPL090C 0.0388 4 0 6 4 336/378 10 705   -   -
  1. Column 3 and 4 list the length of the extent of discernible homology between the two paralogs upstream of the initiation codon and downstream of the termination codon, respectively. Columns 5, 9 and 13 (E1, E2 and E3) list the length of exons 1, 2 and 3 (where applicable), respectively. Columns 6 to 8 provide details about the extent of homology between the two paralogs across intron 1. Columns 6 and 8 list the length of the short tracts of homology in the 5' and 3' ends of intron 1 near the splice junctions. Column 7 lists the length of the nonhomologous tracts of intron 1 for both paralogs. Columns 10 to 12 list similar details for intron 2, where present.