Skip to main content

Table 3 Summary of 24 S. cerevisiae ribosomal protein paralogs with largely nonhomologous intronic sequences despite relatively low levels of synonymous divergence

From: Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans

     

I1 (bp)

 

I2 (bp)

 

Duplicate pair

K S

5' homology (bp)

3' homology (bp)

E1 (bp)

5' H

NH

3' H

E2 (bp)

5' H

NH

3' H

E3 (bp)

YDL075W/YLR406C

0.3363

3

2

57

6

415/343

0

285

 

-

 

-

YMR230W/YOR293W

0.3132

15

1

52

8

400/427

2

266

 

-

 

-

YLR448W/YML073C

0.2992

10

2

15

6

375/406

3

516

 

-

 

-

YDL082W/YMR142C

0.2970

3

2

8

2

358/395

5

592

 

-

 

-

YGR034W/YLR344W

0.2841

0

1

19

6

68/438

3

365

 

-

 

-

YDL083C/YMR143W

0.2838

4

4

24

7

423/535

2

408

 

-

 

-

YBL027W/YBR084C

0.2698

3

0

2

6

370/492

8

568

 

-

 

-

YBR191W/YPL079W

0.2508

5

1

11

7

377/410

4

472

 

-

 

-

YMR242C/YOR312C

0.2504

5

0

1

2

467/416

8

518

 

-

 

-

YDR450W/YML026C

0.2491

4

1

47

8

424/390

3

394

 

-

 

-

YNL302C/YOL121C

0.2076

5

0

20

10

539/378

2

415

 

-

 

-

YLR287C-A/YOR182C

0.2022

5

0

3

6

420/401

4

189

 

-

 

-

YBR048W/YDR025W

0.1987

3

0

45

7

502/330

2

426

 

-

 

-

YNL301C/YOL120C

0.1955

1

0

112

6

424/439

2

449

 

-

 

-

YDR447C/YML024W

0.1896

3

0

3

6

298/382

10

408

 

-

 

-

YGR118W/YPR132W

0.1546

4

3

65

6

312/357

2

373

 

-

 

-

YIL018W/YFR031C-A

0.1523

2

0

4

6

391/138

3

761

 

-

 

-

YIL001W/YKL006W

0.1429

1

2

129

7

318/318

74

288

 

-

 

-

YER074W/YIL069C

0.1333

2

1

3

6

458/401

2

405

 

-

 

-

YGL076C/YPL198W

0.1196

5

0

11

6

451/400

12

94

7

456/395

5

630

YHR141C/YNL162W

0.0918

10

0

4

5

433/504

2

317

 

-

 

-

YJR145C/YHR203C

0.0854

6

1

14

7

247/260

2

772

 

-

 

-

YDL136W/YDL191W

0.0395

2

2

3

4

387/473

12

360

 

-

 

-

YBR181C/YPL090C

0.0388

4

0

6

4

336/378

10

705

 

-

 

-

  1. Column 3 and 4 list the length of the extent of discernible homology between the two paralogs upstream of the initiation codon and downstream of the termination codon, respectively. Columns 5, 9 and 13 (E1, E2 and E3) list the length of exons 1, 2 and 3 (where applicable), respectively. Columns 6 to 8 provide details about the extent of homology between the two paralogs across intron 1. Columns 6 and 8 list the length of the short tracts of homology in the 5' and 3' ends of intron 1 near the splice junctions. Column 7 lists the length of the nonhomologous tracts of intron 1 for both paralogs. Columns 10 to 12 list similar details for intron 2, where present.
Back to article page

Genome Biology

ISSN: 1474-760X

Contact us