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Table 1 List of 56 gene duplications in S. cerevisiae with K S < 0.35 that appear to span a single locus only

From: Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans

Duplicate pair K S Structural category Chromosomal location Duplication span (bp) 5' homology (bp) 3' homology (bp)
*YPL220W/YGL135W 0.0000 Complete XVI/VII 657 3 0
*YBR031W/YDR012W 0.0038 Complete II/IV 1,102 1 12
*YDR342C/YDR343C 0.0052 Complete IV/IV 1,896 97 86
*YPR080W/YBR118W 0.0066 Complete XVI/II 1,381 0 4
*YOR133W/YDR385W 0.0072 Complete XV/IV 2,533 0 3
YMR321C/YPL273W 0.0155 Chimeric XIII/XVI 510 0 197
*YDL182W/YDL131W 0.0222 Chimeric IV/IV 1,220 0 0
*YJL138C/YKR059W/ 0.0237 Complete X/XI 1,192 4 0
YIL177C/YLR462W_464W_466W 0.0238 Complete IX/XII 6,907 816 423
*YBR181C/YPL090C 0.0388 Complete II/XVI 1,107 4 0
*YDL136W/YDL191W 0.0395 Complete IV/IV 858 2 2
YBL107W-A/YER138W-A 0.0435 Complete II/V 310 153 52
*YNL209W/YDL229W 0.0612 Complete XIV/IV 1,883 6 35
*YDL184C/YDL133C-A/ 0.0612 Complete IV/IV 113 19 17
*YBL072C/YER102W 0.0817 Complete II/V 607 3 1
*YJR145C/YHR203C 0.0854 Complete X/VIII 1,060 6 1
*YHR141C/YNL162W 0.0918 Complete VIII/XIV 843 10 0
*YPR156C/YGR138C 0.0985 Chimeric XVI/VII 1,419 0 0
YNL030W/YBR0009C 0.1062 Complete XIV/II 353 41 0
*YJR009C/YGR192C 0.1123 Complete X/VII 1,055 56 0
YAL005C/YLL024C 0.1147 Complete I/XII 1,931 0 2
*YGL076C/YPL198W 0.1196 Complete VII/XV1 1,658 5 0
*YPR102C/YGR085C 0.1237 Complete XVI/VII 534 6 3
*YER074W/YIL069C 0.1333 Complete V/IX 876 2 1
*YHL001W/YKL006W 0.1429 Complete VIII/XI 819 1 2
*YIL018W/YFR031C-A 0.1523 Complete IX/VI 1,167 2 0
*YGR118W/YPR132W 0.1546 Complete VII/XVI 810 4 3
*YDL131W/YDL182W 0.1768 Chimeric IV/IV 1,232 0 0
*YLL045C/YHL033C 0.1809 Complete XII/VIII 774 0 3
*YDR447C/YML024W 0.1896 Complete IV/XIII 812 3 0
YGL258W/YOR387C 0.1939 Complete VII/XV 1,424 796 7
*YNL301C/YOL120C 0.1955 Complete XIV/XV 1,009 1 0
*YBR048W/YDR025W 0.1987 Complete II/IV 985 3 0
*YLR287C-A/YOR182C 0.2022 Complete XII/XV 628 5 0
*YNL302C/YOL121C 0.2076 Complete XIV/XV 991 5 0
YIL029C/YPR071W 0.2154 Chimeric IX/XVI 659 149 0
YGL147C/YNL067W 0.2490 Complete VII/XIV 576 0 0
*YDR450W/YML026C 0.2491 Complete IV/XIII 881 4 1
*YMR242C/YOR312C 0.2504 Complete XIII/XV 1,001 5 0
*YBR191W/YPL079W 0.2508 Complete II/XVI 910 5 1
*YBL027W/YBR084-C 0.2698 Complete II/II 1,079 3 0
*YDR312W/YHR066W 0.2703 Complete IV/VIII 1,362 0 0
*YDL083C/YMR143W 0.2838 Complete IV/XIII 984 4 4
*YEL034W/YJR047C 0.2838 Complete V/X 475 0 1
*YGR034W/YLR344W 0.2841 Complete VII/XII 862 0 1
*YGL031C/YGR148C 0.2862 Complete VII/VII 471 0 3
*YDL082W/YMR142C 0.2970 Complete IV/XIII 1,007 3 2
*YLR448W/YML073C 0.2992 Complete XII/XIII 958 10 2
*YLR029C/YMR121C 0.3061 Complete XII/XIII 619 4 0
*YMR230W/YOR293W 0.3132 Complete XIII/XV 771 15 1
*YLR441C/YML063W 0.3170 Complete XII/XIII 774 5 1
*YCR024C-A/YEL017C-A 0.3176 Complete III/V 137 5 0
*YGR027C/YLR333C 0.3187 Complete VII/XII 345 17 1
YHR043C/YHR044C 0.3245 Complete VIII/VIII 776 1 34
*YMR186W/YPL240C 0.3319 Complete XIII/XVI 2,132 2 0
YDL075W/YLR406C 0.3363 Complete IV/XII 768 3 2
  1. Columns 1 and 2 list the systematic names of the two paralogs in question as per the Saccharomyces Genome Database. *A gene duplicate pair that has been classified as an ohnolog resulting from a WGD event. An ancestrally single locus that currently exists as three adjacent genes due to frame-shift mutations. Column 3 lists the synonymous-site divergence (K S ) between the two paralogs as computed by the Nei and Gojobori method with a correction for multiple hits. Column 4 lists the particular category of structural resemblance (complete, partial or chimeric). Column 5 lists the chromosomal location of paralogs 1 and 2, respectively. Column 6 provides a minimal estimate of the length of the duplicated region, based on current visual inspection of the extent of sequence homology across the paralogs' coding and flanking regions. Columns 7 and 8 list the extent of discernible sequence homology between the paralogs in their 5' and 3' flanking regions, respectively.