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Table 8 Indication of intrachromosomal recombination in TgCkUg2

From: Whole genome sequencing of a natural recombinant Toxoplasma gondiistrain reveals chromosome sorting and local allelic variants

Locus position

VIII-19

0.9 Mb

VIII-20

2.1 Mb

VIII-21

5.8 Mb

Me49 (II)

A

T

G

C

T

T

T

C

T

G

A

G

C

G

TgCkUg5

*

*

*

*

*

*

*

*

*

*

*

*

*

*

TgCkUg8

*

*

*

*

A

C

*

T

*

A

*

*

*

*

TgCkUg2

*

*

*

*

A

C

*

T

*

A

*

A

A

T

TgCkUg6

T

*

C

G

*

*

C

*

C

*

T

A

A

T

VEG (III)

T

C

C

G

*

*

C

*

C

*

T

A

A

T

  1. For loci VIII-19 and VIII-20 located around 0.9 and 2.1 Mb on chromosome VIII, TgCkUg2 is type II-like and shares some local allelic variants with TgCkUg8. Later on the chromosome, TgCkUg2 is type III-like, as shown by the VIII-21 locus and the major SNP type (Figure 1; Additional data file 1).
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Genome Biology

ISSN: 1474-760X

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