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Table 3 Genes with more than two novel SNPs in the coding region of TgCkUg2

From: Whole genome sequencing of a natural recombinant Toxoplasma gondiistrain reveals chromosome sorting and local allelic variants

Gene ID (v4.3)*   Novel SNPs in TgCkUg2 SNPs between the three lineages  
  Number Synonymous Non-synonymous Synonymous Non-synonymous Protein description
641.m01562 IV 1 1 12 86 SRS16B
641.m02553 IV 1 1 6 1 WD-40 repeat protein, putative
49.m03276 VI 1 1 0 4 ROP29
49.m03279 VI 2 8 1 13 Hypothetical
49.m03372 VI 1 1 13 3 Long chain fatty acid CoA ligase
55.m04829 VIIb 1 3 1 2 SRS26A
44.m02583 VIII 0 2 9 11 Hypothetical
44.m05903 VIII 0 2 7 8 Hypothetical
57.m01765 IX 0 2 143 231 Protein kinase domain containing
2.m00067 IX 3 7 0 0 Hypothetical
57.m01732 IX 0 2 7 8 Hypothetical
80.m02252 IX 1 1 4 2 Phosphoenolpyruvate carboxykinase, putative
42.m07434 X 0 2 0 0 Hypothetical
551.m00238 XII 3 6 8 44 ROP5
65.m00001 XII 4 0 9 6 NTPase I
  1. *Since the comparison was made against the annotation of Me49 in v4.3 of ToxoDB, these gene IDs are used throughout. These remain searchable in the current annotation (v 5.0). Data from ToxoDB showing the total number of SNPs between GT1, Me49 and VEG, in order to put the number of novel SNPs into context.