Gene ID | Gene name | No. BS | BS length | No. removed BSs | No. shifted BSs | Percentage |
|---|
b3357
|
crp
| 218 | 22 | 20 | 31 | 23.4% |
b1221
|
narL
| 74 | 7 | 2 | 11 | 17.6% |
b3261
|
fis
| 68 | 21 | 13 | 17 | 44.1% |
b1334
|
fnr
| 54 | 14 | 2 | 3 | 9.3% |
b0683
|
fur
| 46 | 15 | 1 | 43 | 95.7% |
b0889
|
lrp
| 43 | 12 | 4 | 23 | 62.8% |
b3912
|
cpxR
| 33 | 15 | 9 | 6 | 45.5% |
Total | Â | 536 | Â | 51 | 134 | 34.5% |
- Summary of the results of the application of MotifAdjuster to all data sets of CoryneRegNet 4.0 from Escherichia coli with at least 30 BSs and of at most 25 bp length. Columns 1 and 2 show the gene ID and gene name of the TF; columns 3 and 4 show the number of BSs stored in the database and their lengths; columns 5 and 6 show the number of BSs proposed to be removed and to be shifted; and column 7 shows the percentage of BSs to be removed or shifted. Interestingly, the percentage of proposed adjustments varies strongly from TF to TF, ranging from 9.3% for Fnr to 95.7% for Fur. In summary, we find in the complete data set of 536 BSs that 51 BSs are proposed to be removed and 134 BSs are proposed to be shifted, resulting in 34.5% of the data set being proposed for adjustments.
