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Table 3 Comparison of CSDeconv with "simplified" CSDeconv

From: A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

DosR data GABP data
Motif match for CSDeconv Motif match for simplified CSDeconv Motif match for CSDeconv Motif match for simplified CSDeconv
88,125.5 88,124.5   60,209,242
434,926.5 434,925.5   60,209,279
665,861.5 665,860.5 60,209,300 60,209,299
  665,882.5 60,209,320 60,209,319
668,497.5 668,498.5   60,209,356
801,480.5    60,209,397
1,639,628 1,639,629 60,209,418 60,209,417
1,960,521 1,960,520 60,355,273 60,355,274
  1,960,542   60,355,294
1,960,625 1,960,624   60,355,314
1,965,472 1,965,473   60,355,334
1,965,512 1,965,513 60,355,374 60,355,375
  1,965,533   60,355,395
2,056,376 2,056,377   60,355,415
  2,056,410   60,355,435
  2,238,919 60,483,321 60,483,320
2,238,939 2,238,940   60,508,762
  2,256,475 60,508,861 60,508,862
2,256,497 2,256,498 60,589,062 60,589,061
2,279,006 2,279,007   60,589,119
  2,279,027   60,589,144
2,279,063 2,279,062   60,589,163
2,949,473 2,949,472   60,784,040
  2,949,496   60,784,108
2,953,075 2,953,074 60,784,168 60,784,167
  2,953,099   60,784,201
2,954,793    60,802,658
2,955,032 2,955,033   60,802,702
  2,955,099 60,802,724 60,802,725
2,955,477    60,802,741
3,492,093 3,492,094   60,802,761
3,496,452 3,496,453   60,802,785
  3,500,832   60,802,817
3,500,854 3,500,853   60,808,690
    60,808,717
   60,808,763  
    60,808,770
    60,808,789
    60,808,815
   60,838,195 60,838,196
    60,846,664
    60,846,794
    60,857,070
   60,878,251 60,878,250
    60,878,292
    60,878,366
   60,878,387 60,878,388
    61,517,979
   61,518,050 61,518,051
   61,518,359  
   61,741,682  
    61,741,862
   61,741,895  
    61,741,918
  1. Locations of motif matches for CSDeconv and a simplified CSDeconv that uses motif finding instead of blind deconvolution are listed for both the DosR and GABP datasets. Offsets are observed in the matching sequences for the two methods owing to differing motifs found by the methods.