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Table 2 Results of CSDeconv on GABP data

From: A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

Peak ID Position Amplitude Position of motif match Difference Absolute difference Location CpG island
1 60,209,266.5 145.6 60,209,299.5 33 33 Upstream of Hs.631589 No
2 60,209,352.0 242.4 60,209,319.5 -32.5 32.5 Upstream of Hs.631589 No
3 60,209,441.8 32.1 60,209,417.5 -24.3 24.3 In Hs.631589 No
4 60,355,290.1 93.1 60,355,272.5 -17.6 17.6 In TNNI3 No
5 60,355,384.7 109.8 60,355,373.5 -11.2 11.2 In TNNI3 No
6 60,483,301.5 116.7 60,483,320.5 19 19 Upstream of HSPBP1 Yes
7 60,508,823.3 53.5 60,508,860.5 37.2 37.2 In BRSK1 No
8 60,589,079.4 89.0 60,589,061.5 -17.9 17.9 In LOC388564, Upstream of RPL28 Yes
9 60,784,129.0 152.4 60,784,167.5 38.5 38.5 Upstream of ZNF579 Yes
10 60,802,703.2 72.5 60,802,723.5 20.3 20.3 In FIZ1 Yes
11 60,802,828.5 34.2     Upstream of FIZ1 Yes
12 60,808,717.3 19.1 60,808,762.5 45.2 45.2 Downstream of ZNF524 Yes
13 60,838,116.9 163.1     Upstream of ZNF580 Yes
14 60,838,170.7 87.4 60,838,194.5 23.8 23.8 Upstream of ZNF580 Yes
15 60,846,738.1 37.1     Upstream of ZNF581 Yes
16 60,856,978.7 23.4     Upstream of U2AF2 Yes
17 60,878,268.6 125.4 60,878,250.5 -18.1 18.1 Upstream EPN1 Yes
18 60,878,368.7 105.4 60,878,386.5 17.8 17.8 Upstream of EPN1 Yes
19 61,517,917.1 24.8     Upstream of LOC729994 Yes
20 61,518,034.1 98.8 61,518,049.5 15.4 15.4 Upstream of LOC729994 Yes
21 61,518,366.6 26.5 61,518,358.5 -8.1 8.1 Upstream of LOC729994 Yes
22 61,741,681.4 16.8 61,741,681.5 0.1 0.1 In ZFP28 Yes
23 61,741,850.8 25.5 61,741,894.5 43.7 43.7 In ZFP28 Yes
  1. CSDeconv identifies a total of 23 binding sites between position 60,000,000 and 62,000,000 on chromosome 19. The position of the sequence matching the motif shown in Figure 3a is given if such a sequence exists within 50 bp of the predicted binding site.