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Table 1 Results of CSDeconv on DosR data

From: A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data

Peak ID Position Amplitude Position of motif match Difference Absolute difference Location
1 88,097.4 2.4 88,125.5 28.1 28.1 Upstream of Rv0079
2 434,899.0 2.8 434,926.5 27.5 27.5 In Rv0356c; upstream of Rv0355c
3 665,844.1 7.8 665,861.5 17.4 17.4 In Rv0573c; upstream of Rv0572c
4 668,490.6 2.8 668,497.5 6.9 6.9 Upstream of Rv0574c
5 801,443.4 3.6 801,480.5 37.1 37.1 In Rv0702
6 1,639,602.3 8.5 1,639,627.5 25.2 25.2 In Rv1453
7 1,960,515.3 13.7 1,960,520.5 5.2 5.2 Upstream of Rv1733c
8 1,960,611.5 28.0 1,960,624.5 13 13 Upstream of Rv1733c
9 1,960,697.2 11.0     Upstream of Rv1733c
10 1,965,459.6 10.8 1,965,471.5 11.9 11.9 Upstream of Rv1737c
11 1,965,540.8 15.2 1,965,511.5 -29.3 29.3 Upstream of Rv1737c
12 2,056,358.2 2.7 2,056,375.5 17.3 17.3 Upstream of Rv1813c, Rv1814
13 2,238,941.0 9.5 2,238,938.5 -2.5 2.5 Upstream of Rv1996
14 2,256,459.3 13.0 2,256,496.5 37.2 37.2 Upstream of Rv2007c
15 2,278,994.7 43.5 2,279,005.5 10.8 10.8 Upstream of Rv2031c, Rv2032
16 2,279,049.0 25.8 2,279,062.5 13.5 13.5 Upstream of Rv2031c, Rv2032
17 2,949,475.3 5.7 2,949,472.5 -2.8 2.8 Upstream of Rv2623
18 2,953,044.8 8.3 2,953,074.5 29.7 29.7 Upstream of Rv2626c
19 2,954,750.4 5.1 2,954,792.5 42.1 42.1 Upstream of Rv2627c, Rv2628
20 2,955,065.5 9.9 2,955,031.5 -34 34 Upstream of Rv2627c, Rv2628
21 2,955,479.2 9.5 2,955,476.5 -2.7 2.7 Upstream of Rv2629
22 3,492,069.6 12.0 3,492,092.5 22.9 22.9 In Rv3126c; upstream of Rv3127
23 3,496,438.8 54.7 3,496,451.5 12.7 12.7 Upstream of Rv3130c, Rv3131
24 3,500,822.1 3.6 3,500,853.5 31.4 31.4 Upstream of Rv3134c
  1. CSDeconv identifies a total of 24 binding sites. The position of the sequence matching the motif shown in Figure 3a is given if such a sequence exists within 50 bp of the predicted binding site.