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Table 5 KOG-assigned EST clusters predicted to be highly 1N-specific based on statistical comparison of libraries

From: Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell

Cluster ID Number of 1N ESTs P-value Homolog ID Homolog description BLAST
Amino acid transport and metabolism      
   GS01965 6 7.8 × 10-3 CDO_CAEBR Cysteine dioxygenase 8 × 10-19
   GS00820 7 3.9 × 10-3 *Q8GYS4_ARATH Putative uncharacterized protein 5 × 10-11
Carbohydrate transport and metabolism      
   GS01922 6 7.8 × 10-3 AAPC_CENCI Putative apospory-associated protein C 2 × 10-25
Cell cycle control, cell division, chromosome partitioning      
   GS00508 6 7.8 × 10-3 †Cyclin_N Cyclin, N-terminal domain 1 × 10-09
Chromatin structure and dynamics      
   GS09138 13 6.1 × 10-5 H4_OLILU Histone H4 1 × 10-38
Cytoskeleton      
   GS00708 6 7.8 × 10-3 DYI3_ANTCR Dynein intermediate chain 3, ciliary 6 × 10-62
Function unknown      
   GS00091 6 7.8 × 10-3 EMAL4_MOUSE Echinoderm microtubule-associated protein-like 4 4 × 10-36
   GS02362 7 3.9 × 10-3 *A8Q1G0_MALGO Putative uncharacterized protein 8 × 10-16
   GS00939 6 7.8 × 10-3 * B8BBW9_ORYSI Putative uncharacterized protein 9 × 10-08
General function prediction only      
   GS01285 6 7.8 × 10-3 EHMT2_MOUSE Histone-lysine N-methyltransferase 3 × 10-13
   GS08284 8 2.0 × 10-3 EI2B_AQUAE Putative translation initiation factor eIF-2B 4 × 10-27
   GS00938 7 3.9 × 10-3 MORN3_HUMAN MORN repeat-containing protein 3 4 × 10-18
   GS00985 6 7.8 × 10-3 PTHD2_MOUSE Patched domain-containing protein 2 2 × 10-08
Inorganic ion transport and metabolism      
   GS01939 6 7.8 × 10-3 AMT12_ARATH Ammonium transporter 1 member 2 2 × 10-25
   GS02431 8 2.0 × 10-3 RABL5_DANRE Rab-like protein 5 3 × 10-28
   GS01141 6 7.8 × 10-3 TM9S2_RAT Transmembrane 9 superfamily member 2 7 × 10-84
   GS00197 6 7.8 × 10-3 ARF1_SALBA ADP-ribosylation factor 1 1 × 10-70
Nucleotide transport and metabolism      
   GS00406 7 3.9 × 10-3 NDK7_HUMAN Nucleoside diphosphate kinase 7 2 × 10-32
Posttranslational modification, protein turnover, chaperones      
   GS00465 6 7.8 × 10-3 TRAP1_DICDI TNF receptor-associated protein 1 homolog, mitochondrial precursor 1 × 10-98
   GS04078 6 7.8 × 10-3 BIRC7_HUMAN Baculoviral IAP repeat-containing protein 7 2 × 10-06
   GS01693 6 7.8 × 10-3 IQCAL_HUMAN IQ and AAA domain-containing protein ENSP00000340148 3 × 10-41
   GS00324 8 2.0 × 10-3 TTLL4_HUMAN Tubulin polyglutamylase 1 × 10-42
   GS06285 7 3.9 × 10-3 IAP3_NPVOP Apoptosis inhibitor 3 1 × 10-05
   GS03771 6 7.8 × 10-3 14335_ORYSJ 14-3-3-like protein GF14-E 1 × 10-34
   GS01424 6 7.8 × 10-3 PCSK7_RAT Proprotein convertase subtilisin/kexin type 7 precursor 2 × 10-08
   GS01530 6 7.8 × 10-3 YDM9_SCHPO Uncharacterized RING finger protein C57A7.09 precursor 3 × 10-07
   GS00537 7 3.9 × 10-3 XRP2_XENLA Protein XRP2 5 × 10-20
Signal transduction mechanisms      
   GS01456 8 2.0 × 10-3 CML12_ARATH Calmodulin-like protein 12 3 × 10-11
   GS03471 6 7.8 × 10-3 DNAL1_CHLRE Flagellar outer arm dynein light chain 1 1 × 10-52
   GS00910 14 3.1 × 10-5 KAPR2_DROME amp-dependent protein kinase type II regulatory subunit 2 × 10-08
   GS04612 6 7.8 × 10-3 RHOM_DROME Protein rhomboid 3 × 10-08
   GS02444 11 2.4 × 10-4 ANR11_HUMAN Ankyrin repeat domain-containing protein 11 3 × 10-09
   GS02191 6 7.8 × 10-3 LRC50_HUMAN Leucine-rich repeat-containing protein 50 1 × 10-54
   GS00234 7 3.9 × 10-3 KCC1A_RAT Calcium/calmodulin-dependent protein kinase type 1 1 × 10-51
   GS00184 6 7.8 × 10-3 TNI3K_RAT Serine/threonine-protein kinase 3 × 10-14
   GS01544 7 3.9 × 10-3    
   GS03554 7 3.9 × 10-3 †PH Plecstrin homology domain 3 × 10-09
Transcription      
   GS00117 8 2.0 × 10-3 MYB_DROME Myb protein 9 × 10-06
   GS00273 8 2.0 × 10-3 MYB_CHICK Myb proto-oncogene protein (C-myb) 3 × 10-34
   GS01762 6 7.8 × 10-3 MYBB_CHICK Myb-related protein B 5 × 10-06
  1. Only clusters with zero ESTs originating from the 2N library are shown. The number of 1N EST reads in each cluster and the P-value for significance of the difference between libraries are shown. When no Swiss-Prot homolog was detected, ID and homology values for the top Uniprot homolog are given (indicated by an asterisk), or the CDD name and homology values are given (indicated by †). Clusters are arranged by KOG class. Clusters in bold were chosen for RT-PCR validation. Additional data file 4 gives a complete list of all clusters predicted to be 1N-specific by statistical comparison of libraries.
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Genome Biology

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