Table 2 Pearson correlation coefficients between the levels of histone modification and PSFM score, and REST occupancy
From: Profiling RE1/REST-mediated histone modifications in the human genome
Factor | PSFM scores of DJ-cRE1 | REST ChIP-Seq reads |
|---|---|---|
H2AK5ac | -0.119 | -0.141 |
H2AK9ac | -0.074 | 0.138 |
H2BK120ac | -0.226* | -0.061 |
H2BK12ac | -0.202* | -0.101 |
H2BK20ac | -0.220* | -0.055 |
H2BK5ac | -0.174* | -0.072 |
H3K14ac | -0.139 | -0.054 |
H3K18ac | -0.177* | -0.102 |
H3K23ac | -0.13 | -0.024 |
H3K27ac | -0.193* | -0.070 |
H3K36ac | -0.226* | -0.120 |
H3K4ac | -0.213* | -0.119 |
H3K9ac | -0.202* | -0.084 |
H4K12ac | -0.153 | -0.050 |
H4K16ac | -0.104 | -0.053 |
H4K5ac | -0.136 | -0.071 |
H4K8ac | -0.136 | -0.007 |
H4K91ac | -0.228* | -0.103 |
H2BK5me1 | 0.036 | 0.413* |
H3K27me1 | -0.121 | -0.018 |
H3K27me2 | -0.075 | -0.170* |
H3K27me3 | -0.027 | -0.187* |
H3K36me1 | -0.203* | 0.012 |
H3K36me3 | -0.026 | -0.108 |
H3K4me1 | -0.059 | -0.028 |
H3K4me2 | -0.157 | -0.041 |
H3K4me3 | -0.200* | -0.093 |
H3K79me1 | -0.125 | -0.135 |
H3K79me2 | -0.096 | -0.092 |
H3K79me3 | -0.110 | -0.044 |
H3K9me1 | -0.147 | 0.052 |
H3K9me2 | 0.116 | 0.375* |
H3K9me3 | 0.044 | -0.091 |
H3R2me1 | 0.023 | 0.273* |
H3R2me2 | -0.041 | 0.355* |
H4K20me1 | 0.081 | 0.418* |
H4K20me3 | 0.13 | 0.039 |
H4R3me2 | 0.102 | 0.484* |
H2AZ | -0.156 | -0.086 |
PolII | -0.132 | 0.075 |
PSFM score | - | 0.178* |