From: Genome assembly forensics: finding the elusive mis-assembly
 |  |  |  | Mis-assembly signatures | Suspicious regions | ||||
---|---|---|---|---|---|---|---|---|---|
Species | Len | Ctgs | Errs | Num | Valid | Sens | Num | Valid | Sens |
B. anthracis | 5.2 | 87 | 2 | 1,336 | 21 | 100.0 | 127 | 2 | 100.0 |
B. suis | 3.4 | 120 | 10 | 1,047 | 30 | 80.0 | 158 | 9 | 90.0 |
C. burnetii | 2.0 | 55 | 22 | 1,375 | 70 | 100.0 | 124 | 19 | 100.0 |
C. caviae | 1.4 | 270 | 12 | 625 | 16 | 83.3 | 50 | 8 | 66.7 |
C. jejuni | 1.8 | 53 | 5 | 290 | 11 | 80.0 | 61 | 3 | 60.0 |
D. ethenogenes | 1.8 | 632 | 12 | 688 | 22 | 91.7 | 88 | 9 | 100.0 |
F. succinogenes | 4.0 | 455 | 21 | 1,670 | 27 | 95.2 | 266 | 14 | 66.7 |
L. monocytogenes | 2.9 | 172 | 1 | 1,381 | 5 | 100.0 | 201 | 1 | 100.0 |
M. capricolum | 1.0 | 17 | 3 | 83 | 0 | 0.0 | 16 | 0 | 0.0 |
N. sennetsu | 0.9 | 16 | 0 | 91 | 0 | NA | 13 | 0 | NA |
P. intermedia | 2.7 | 243 | 21 | 1,655 | 57 | 100.0 | 201 | 20 | 100.0 |
P. syringae | 6.4 | 274 | 64 | 2,841 | 200 | 98.4 | 366 | 55 | 98.4 |
S. agalactiae | 2.1 | 127 | 21 | 687 | 53 | 95.2 | 112 | 18 | 85.7 |
S. aureus | 2.8 | 824 | 41 | 1,850 | 69 | 97.6 | 227 | 18 | 75.6 |
W. pipientis | 3.3 | 2017 | 31 | 761 | 92 | 100.0 | 132 | 30 | 100.0 |
X. oryzae | 5.0 | 50 | 151 | 2,569 | 379 | 100.0 | 100 | 69 | 100.0 |
Totals | 46.8 | 5412 | 417 | 18,949 | 1,052 | 96.9 | 2,242 | 275 | 92.6 |