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Table 6 Distribution of SSR length by the repeat types

From: Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

 

OMAP SSR

japonica SSR

indica SSR

Repeat

No.

Average length

Standard deviation

No.

Average length

Standard deviation

No.

Average length

Standard deviation

Di

8,246

44.51

45.15

8,636

43.32

24.94

8,317

40.78

22.2

Tri

4,541

28.75

13.61

6,259

29.26

17.59

6,059

28.89

15.71

Tetra

1,844

27.69

12.69

2,439

34.25

28.81

2,285

29.9

16.51

Penta

1,837

25.11

7.73

2,628

25.24

6.39

2,142

25.52

9

Hexa

512

27.46

10.5

691

29.96

41.33

567

28.04

20.58

[C/G]A DNR*

3,151

30.29

11.08

3,617

32.31

14.76

3,722

31.55

12.45

TA DNR*

5,086

53.32

55

4,996

51.38

27.62

4,573

48.38

25.32

G/C rich TNR†

2,442

24.56

4.51

4,673

24.85

5.59

4,448

24.79

5.56

A/T rich TNR†

2,099

33.64

18.24

1,586

42.25

30.07

1,611

40.19

25.86

  1. *Di-nucleotide repeat. †Tri-nucleotide repeat.
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Genome Biology

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