Skip to main content

Table 4 Classification of core genes into functional categories and phylogroups

From: Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destruction

Category Phylogroup
  ROW* RO R8 R7 Total
Information      
   J Translation 68 9 8 0 85
   K Transcription 13 2 4 0 19
   L Replication 38 2 2 0 42
   Total 119 13 14 0 146
Cellular processess      
   D Cell cycle 9 3 0 0 12
   V Defense mechanisms 4 1 1 0 6
   T Signal transduction 5 1 3 0 9
   M Cell wall/membrane 21 6 32 0 59
   N Cell motility 0 0 1 0 1
   U Intracellular trafficking 26 4 0 0 30
   O Post-translational modification 32 7 3 0 42
   Total 97 22 40 0 159
Metabolism      
   C Energy production 45 9 5 0 59
   G Carbohydrate transport 6 1 0 0 7
   E Amino acid transport 13 6 1 0 20
   F Nucleotide transport 9 0 1 0 10
   H Coenzyme transport 14 2 2 0 18
   I Lipid transport 18 1 3 0 22
   P Inorganic ion transport 8 4 2 0 14
   Q Secondary metabolites 3 1 2 0 6
   Total 116 24 16 0 156
Poorly characterized      
   R General function 24 8 10 0 42
   S Function unknown 12 6 13 1 32
   Unclassified 60 31 53 2 146
   Total 96 45 76 3 220
Grand total 428 104 146 3 681
  1. The phylogroup ROW* is a summary of ROW, RW, W and OW.