Table 1 Oligonucleotides and short repeats found in the local context of genomic HNF4α sites
Oligonucleotide/repeat | Mode | Wind_from | Wind_to | r min | r max | Alpha | Avrfreq_Y | Avrfreq_N |
|---|---|---|---|---|---|---|---|---|
MDDR | (I) | 22 | 66 | 0 | 0 | 0.003082 | 13.433 (3.665) | 11.051 (4.782) |
ANGB | (I) | 20 | 38 | 0 | 0 | 0.016132 | 5.358 (2.529) | 3.582 (2.845) |
CDDM | (I) | 36 | 38 | 0 | 0 | 0.020372 | 4.346 (2.332) | 3.212 (1.732) |
AV-VS | (II) | 1 | 34 | 33 | 33 | 0.008246 | 6.694 (3.663) | 4.893 (3.088) |
MD-DB | (II) | 20 | 70 | 20 | 25 | -0.003212 | 16.941 (3.078) | 14.711 (3.344) |
BR-NT | (II) | 33 | 37 | 9 | 18 | -0.003942 | 4.802 (5.460) | 7.702 (5.144) |
VS-YA | (II) | 1 | 34 | 11 | 11 | 0.0103 | 4.237 (1.742) | 3.121 (2.640) |
VB-HA | (II) | 1 | 34 | 5 | 5 | 0.008647 | 9.028 (2.985) | 6.517 (3.741) |
HM-GN | (II) | 40 | 50 | 2 | 4 | 0.006468 | 7.783 (4.335) | 4.672 (3.764) |
(RBNH)2 | (III) | 20 | 51 | 5 | 12 | 0.030376 | 7.259 (1.778) | 5.961 (2.168) |
(MVKN)2 | (III) | 20 | 51 | 7 | 13 | 0.015979 | 3.123 (1.413) | 2.388 (1.155) |
(BNDK)2 | (III) | 32 | 32 | 7 | 7 | -0.002214 | 0.000 (0.000) | 14.343 (28.652) |
(DNCD)2 | (III) | 28 | 42 | 7 | 7 | 0.068635 | 4.176 (2.797) | 1.051 (2.196) |
(NBHV)2 | (III) | 26 | 26 | 7 | 7 | -0.001045 | 0.000 (0.000) | 13.626 (28.102) |
(NVYB)2 | (III) | 29 | 29 | 7 | 7 | -0.001696 | 0.000 (0.100000) | 12.909 (27.523) |